This page was generated from examples/models/h2o_mojo/h2o_model.ipynb.

H2O Model

  • Wrap a H2O model for use as a prediction microservice in seldon-core
  • Run locally on Docker to test
  • Deploy on seldon-core running on minikube

Dependencies

pip install seldon-core
pip install sklearn

Train locally

[8]:
!mkdir -p experiment
[9]:
import h2o
h2o.init()
from h2o.estimators.glm import H2OGeneralizedLinearEstimator
path = "https://s3.amazonaws.com/h2o-public-test-data/smalldata/prostate/prostate.csv.zip"
h2o_df = h2o.import_file(path)
h2o_df['CAPSULE'] = h2o_df['CAPSULE'].asfactor()
model = H2OGeneralizedLinearEstimator(family = "binomial")
model.train(y = "CAPSULE",
            x = ["AGE", "RACE", "PSA", "GLEASON"],
            training_frame = h2o_df)
modelfile = model.download_mojo(path="./experiment/", get_genmodel_jar=False)
print("Model saved to " + modelfile)

Checking whether there is an H2O instance running at http://localhost:54321 ..... not found.
Attempting to start a local H2O server...
  Java Version: openjdk version "1.8.0_232"; OpenJDK Runtime Environment (build 1.8.0_232-b09); OpenJDK 64-Bit Server VM (build 25.232-b09, mixed mode)
  Starting server from /home/agm/.virtualenvs/seldon-core/lib/python3.6/site-packages/h2o/backend/bin/h2o.jar
  Ice root: /tmp/tmpbv5dpvpz
  JVM stdout: /tmp/tmpbv5dpvpz/h2o_agm_started_from_python.out
  JVM stderr: /tmp/tmpbv5dpvpz/h2o_agm_started_from_python.err
  Server is running at http://127.0.0.1:54321
Connecting to H2O server at http://127.0.0.1:54321 ... successful.
H2O cluster uptime: 01 secs
H2O cluster timezone: Europe/London
H2O data parsing timezone: UTC
H2O cluster version: 3.28.0.1
H2O cluster version age: 21 days, 15 hours and 52 minutes
H2O cluster name: H2O_from_python_agm_ususoe
H2O cluster total nodes: 1
H2O cluster free memory: 6.896 Gb
H2O cluster total cores: 8
H2O cluster allowed cores: 8
H2O cluster status: accepting new members, healthy
H2O connection url: http://127.0.0.1:54321
H2O connection proxy: {'http': None, 'https': None}
H2O internal security: False
H2O API Extensions: Amazon S3, XGBoost, Algos, AutoML, Core V3, TargetEncoder, Core V4
Python version: 3.6.9 final
Parse progress: |█████████████████████████████████████████████████████████| 100%
glm Model Build progress: |███████████████████████████████████████████████| 100%
Model saved to /home/agm/Seldon/seldon-core/examples/models/h2o_mojo/experiment/GLM_model_python_1578393746111_1.zip
[10]:
!mv experiment/*.zip src/main/resources/model.zip

Wrap model using s2i

[11]:
!s2i build . seldonio/seldon-core-s2i-java-build:0.1 h2o-test:0.1 --runtime-image seldonio/seldon-core-s2i-java-runtime:0.1
---> Installing application source...
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[INFO] ------------------------------------------------------------------------
[INFO] Detecting the operating system and CPU architecture
[INFO] ------------------------------------------------------------------------
[INFO] os.detected.name: linux
[INFO] os.detected.arch: x86_64
[INFO] os.detected.release: debian
[INFO] os.detected.release.version: 9
[INFO] os.detected.release.like.debian: true
[INFO] os.detected.classifier: linux-x86_64
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Seldon Core H2O example 0.0.1-SNAPSHOT
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[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 55.370 s
[INFO] Finished at: 2020-01-07T10:43:36+00:00
[INFO] Final Memory: 45M/946M
[INFO] ------------------------------------------------------------------------
total 110004
-rw-r--r--    1 1000     1000     112638180 Jan  7 10:43 app.jar
drwxr-xr-x    7 1000     1000          4096 Jan  7 10:43 build
Build completed successfully
[12]:
!docker run --name "h2o_predictor" -d --rm -p 5000:5000 h2o-test:0.1
ef967412b7e90d92de373b7625d24d06739611af8c2cf68a1b43e73e5d6c3f83

Send some random features that conform to the contract

[6]:
!seldon-core-tester contract.json 0.0.0.0 5000 -p
----------------------------------------
SENDING NEW REQUEST:

[[70.599 '0' '1' '2' 3.24]]
RECEIVED RESPONSE:
data {
  ndarray {
    values {
      list_value {
        values {
          number_value: 0.9687857517177408
        }
        values {
          number_value: 0.031214248282259202
        }
      }
    }
  }
}


[13]:
!docker rm h2o_predictor --force
h2o_predictor

Test using Minikube

Due to a `minikube/s2i issue <https://github.com/SeldonIO/seldon-core/issues/253>`__ you will need `s2i >= 1.1.13 <https://github.com/openshift/source-to-image/releases/tag/v1.1.13>`__

[8]:
!minikube start --memory 4096
😄  minikube v0.34.1 on linux (amd64)
🔥  Creating virtualbox VM (CPUs=2, Memory=4096MB, Disk=20000MB) ...
📶  "minikube" IP address is 192.168.99.100
🐳  Configuring Docker as the container runtime ...
✨  Preparing Kubernetes environment ...
🚜  Pulling images required by Kubernetes v1.13.3 ...
🚀  Launching Kubernetes v1.13.3 using kubeadm ...
🔑  Configuring cluster permissions ...
🤔  Verifying component health .....
💗  kubectl is now configured to use "minikube"
🏄  Done! Thank you for using minikube!

Setup Seldon Core

Use the notebook to Setup Cluster with Ambassador Ingress and Install Seldon Core. Instructions also online.

Build model image and run predictions

[26]:
!eval $(minikube docker-env) && s2i build . seldonio/seldon-core-s2i-java-build:0.1 h2o-test:0.1 --runtime-image seldonio/seldon-core-s2i-java-runtime:0.1
---> Installing application source...
[INFO] Scanning for projects...
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[INFO] ------------------------------------------------------------------------
[INFO] Detecting the operating system and CPU architecture
[INFO] ------------------------------------------------------------------------
[INFO] os.detected.name: linux
[INFO] os.detected.arch: x86_64
[INFO] os.detected.release: debian
[INFO] os.detected.release.version: 9
[INFO] os.detected.release.like.debian: true
[INFO] os.detected.classifier: linux-x86_64
[INFO]
[INFO] ------------------------------------------------------------------------
[INFO] Building Seldon Core H2O example 0.0.1-SNAPSHOT
[INFO] ------------------------------------------------------------------------
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[INFO]
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[INFO] Building jar: /build/target/seldon-core-h2o-example-0.0.1-SNAPSHOT.jar
[INFO]
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[INFO] ------------------------------------------------------------------------
[INFO] BUILD SUCCESS
[INFO] ------------------------------------------------------------------------
[INFO] Total time: 02:23 min
[INFO] Finished at: 2019-04-16T12:57:19+00:00
[INFO] Final Memory: 41M/349M
[INFO] ------------------------------------------------------------------------
total 110008
-rw-r--r--    1 1000     1000     112636923 Apr 16 12:57 app.jar
drwxr-xr-x    7 1000     1000          4096 Apr 16 12:57 build
Build completed successfully
[19]:
!kubectl create -f h2o_deployment.json
seldondeployment.machinelearning.seldon.io/seldon-deployment-example created

Wait until ready (replicas == replicasAvailable)

[21]:
!kubectl rollout status deployment/h2o-deployment-h2o-predictor-1cc70ed
deployment "h2o-deployment-h2o-predictor-1cc70ed" successfully rolled out
[25]:
!seldon-core-api-tester contract.json `minikube ip` `kubectl get svc ambassador -o jsonpath='{.spec.ports[0].nodePort}'` \
    seldon-deployment-example --namespace seldon -p
----------------------------------------
SENDING NEW REQUEST:

[[66.008 '1' '1' '0' 7.051]]
RECEIVED RESPONSE:
meta {
  puid: "d36r5qsei3dd62tkrt6g9i75h5"
  requestPath {
    key: "prostate-classifier"
    value: "h2o-test:0.1"
  }
}
data {
  ndarray {
    values {
      list_value {
        values {
          number_value: 0.42621511584615
        }
        values {
          number_value: 0.57378488415385
        }
      }
    }
  }
}


[ ]:
!minikube delete
[ ]: